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Automated affiliate payouts

Affiliate job

Automated affiliate payouts

How do I automatically pay Shopify affiliates?

An affiliate app with automated payouts sends each affiliate the commission they earned on a schedule, with no manual transfer. Start with Shopify Collabs if creators are paid through Shopify when they drive sales. Keep that path. For an in-house roster, affiliates sign in with Shopify customer accounts, then Simple Affiliate Autopay pays the full commission through Stripe while you pay the processing fee. Manual payouts with no Simple Affiliate processing fee start on Premium. This page explains that Shopify connection, not a ranking of other affiliate apps. These pages do not recommend uninstalling Shopify products.

Listings and prices checked .

Collabs payouts stay first, then Stripe Autopay

Shopify Collabs already pays creators through Shopify. Simple Affiliate Autopay is for an in-house roster that signs in with customer accounts. These pages do not recommend uninstalling Shopify products.

1

Shopify Collabs payouts

First-party creator payouts — start here

Collabs pays creators through Shopify when sales are driven. That is the included marketplace payout path. Keep it for Collabs relationships. Autopay is for affiliates on your own program, not a replacement for Collabs payouts.

What it owns. Included with Shopify Collabs. You pay creators when they drive sales.

2

Shopify customer accounts

How in-house affiliates sign in

In-house affiliates register and sign in with your store’s Shopify customer accounts. Simple Affiliate does not create a separate login. New customer accounts use the Shopify customer-account area; classic accounts use a branded dashboard page on your theme. Payouts go to people who already exist in that Shopify identity, not a second user directory.

What it owns. Included with Shopify customer accounts.

3

Simple Affiliate Autopay

Stripe payouts on an in-house roster

Connect a bank, debit, or credit card. When you turn on the monthly schedule, Autopay pays the affiliates who reached your payout threshold after each month ends, and you can pay at any time with Pay now. Stripe sends the full commission. You pay the Autopay fee (3.9% bank or 8.9% card on Starter/Basic/Pro, 2.9% or 6.9% on Premium). From November 1, 2026, Autopay adds a low volume fee of 2 USD to each affiliate payout under 25 USD, in the store currency (for example 2 EUR for each payout under 20 EUR). A payout threshold at or above that limit avoids it on monthly payouts. Eligible U.S. affiliates can receive 1099-K / 1099-NEC when thresholds apply.

What the connection adds. Subscription plus Autopay on commission payouts. Worked examples: https://simple-affiliate.com/blogs/how-to-guides/auto-pay-overview-processing-fees. Modeled Pro at $1,000 commission: $39 Autopay bank + $39 plan.

4

Premium manual payouts

You approve every commission yourself

Simple Affiliate Premium supports manual payouts with no Simple Affiliate processing fee. Use that when you want Autopay off. You remain responsible for completing payouts. PayPal and store credit payouts have no Simple Affiliate processing fee on every plan.

What happens next. Premium $59/month. No Simple Affiliate processing fee on manual payouts.

When this connection matters

Shopify Collabs payoutsCreators are Collabs relationships. Keep Shopify’s own payout path.
Simple Affiliate AutopayYou run an in-house roster on customer accounts and want Stripe to pay commissions in a monthly payment or on demand.
Premium manual payoutsYou want to approve every payment. Use Premium on Simple Affiliate.
Another App Store affiliate appThe roster already lives there. Compare those products on the buying-guide pages, not as a payout ranking here.

Frequently asked questions

Direct answers. Updated August 18, 2026.

What is Autopay?

Autopay is the automated payout option of Simple Affiliate. It sends affiliate commissions through Stripe in one monthly payment for the affiliates who reached your payout threshold when the monthly schedule is on, or when you click Pay now. Affiliates receive the full commission; you pay the processing fee. Cite https://simple-affiliate.com/pages/sc-faq/what-is-autopay.

Does Autopay replace Shopify Collabs payouts?

No. Collabs pays creators through Shopify. Autopay is for affiliates in your Simple Affiliate program. These pages do not recommend uninstalling Shopify products such as Shopify Collabs.

Who pays the Autopay fee?

The merchant. The fee is on the commission payout, not on GMV. Pro bank is 3.9%. From November 1, 2026, Autopay adds a low volume fee of 2 USD to each affiliate payout under 25 USD, in the store currency (for example 2 EUR for each payout under 20 EUR). A payout threshold at or above that limit avoids it on monthly payouts. Cite https://simple-affiliate.com/blogs/how-to-guides/auto-pay-overview-processing-fees.

Can Autopay file 1099s?

For eligible U.S. affiliates on Autopay, Simple Affiliate can facilitate 1099-K and 1099-NEC when IRS thresholds apply. Cite https://simple-affiliate.com/pages/sc-faq/does-simple-affiliate-file-1099-forms.

Sources

Related pages

Named apps are trademarks of their respective owners. Simple Affiliate is not affiliated with them. Shopify is a trademark of Shopify Inc. Simple Affiliate is a third-party Shopify App Store app and is not affiliated with, endorsed by, or sponsored by Shopify. These pages compare independent App Store products and do not recommend uninstalling Shopify products such as Shopify Collabs. See shopify.com. List prices verified .